borborygmi

Setting up a new mac

Sun 20 October 2013 — Filed under notes; tags: mac read more

Table of Contents

First applications
system-level configuration
ssh
homebrew
- stuff installed using homebrew
- zsh
git
iTerm2 settings
emacs
python
R
mail
sshfs
wkhtmltopdf

These are my notes that I took while setting up a …

Installing R packages

Mon 22 March 2010 — Filed under notes; tags: R-language read more

Table of Contents

Installing from CRAN
Bioconductor
R-forge
Installing packages locally
Reloading a package

Notes to myself about installing R packages.

Installing from CRAN

install.packages(c("ape","sqldf","ROCR"), repos="http://cran.fhcrc.org/", dependencies=TRUE, clean=TRUE)

Bioconductor

source("http://bioconductor.org/biocLite.R")
biocLite(c("Biostrings","BSgenome …